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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
30
DNase-seq
4
ATAC-seq
3
Hi-C
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
218
DNA binding
35
DNA accessibility
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
85
October, 2019
30
June, 2019
28
May, 2019
16
October, 2017
7
July, 2019
2
March, 2020
November, 2018
1
February, 2023
Available data
229
bam
208
bigWig
201
bed narrowPeak
125
bigBed narrowPeak
118
tagAlign
45
bed broadPeak
36
bigBed broadPeak
33
bed bed3+
19
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
2
tsv
1
bed bed3
1
tagAlign bed3+
Organism
260
Homo sapiens
Biosample type
242
tissue
18
primary cell
Organ
545
liver
460
pancreas
323
epithelium
260
brain
229
kidney
227
heart
202
connective tissue
169
vasculature
163
blood vessel
115
limb
97
bone element
89
adipose tissue
87
musculature of body
83
artery
54
blood
54
bodily fluid
42
eye
38
nerve
23
embryo
22
vein
18
ureter
16
spleen
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
urinary bladder
Project
260
AMP
Genome assembly (visualization)
203
GRCh38
150
hg19
Lab
260
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
month_released!
November, 2018
organ_slims!
urinary bladder
assay_slims!
Transcription
BIOSAMPLE
ASSAY
260 results
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ChIP-seq
DNase-seq
ATAC-seq
Hi-C
RRBS
pCHi-C
FAIRE-seq
tissue
brain
20
12
1
1
layer of hippocampus
23
caudate nucleus
15
1
substantia nigra
16
angular gyrus
15
+ See 73 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
astrocyte of the hippocampus
1
See all biosamples
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