Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
84
RNA microarray
79
total RNA-seq
30
DNase-seq
16
ATAC-seq
4
small RNA-seq
3
Hi-C
3
pCHi-C
3
single cell RNA-seq
2
RRBS
1
FAIRE-seq
Assay category
218
DNA binding
86
Transcription
47
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
150
February, 2021
91
November, 2017
86
October, 2019
30
June, 2019
28
May, 2019
18
July, 2019
16
October, 2017
12
February, 2020
9
February, 2023
2
March, 2020
November, 2018
1
May, 2021
Available data
307
bam
278
bigWig
209
bed narrowPeak
125
bigBed narrowPeak
118
tagAlign
88
txt
84
tsv
45
bed broadPeak
36
bigBed broadPeak
33
bed bed3+
19
fastq
5
bed bed3
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
tagAlign bed3+
Organism
443
Homo sapiens
Biosample type
421
tissue
22
primary cell
Organ
939
pancreas
738
liver
683
connective tissue
524
epithelium
490
adipose tissue
393
heart
354
kidney
284
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
61
eye
54
blood
54
bodily fluid
43
nerve
37
embryo
22
vein
20
lung
18
ureter
16
skeleton
16
spleen
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
urinary bladder
Project
442
AMP
1
T1D
Genome assembly (visualization)
281
GRCh38
232
hg19
Lab
442
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
87
inconsistent ontology term
Audit category:
4
missing controlled_by
month_released!
November, 2018
organ_slims!
urinary bladder
BIOSAMPLE
ASSAY
443 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
RNA microarray
total RNA-seq
DNase-seq
ATAC-seq
small RNA-seq
Hi-C
pCHi-C
single cell RNA-seq
RRBS
FAIRE-seq
tissue
bone element
84
bone tissue
58
brain
20
1
12
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
+ See 91 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 3 more…
See all biosamples
Download