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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
ChIP-seq
30
DNase-seq
1
FAIRE-seq
Assay category
94
DNA binding
31
DNA accessibility
Target of assay
91
histone
91
histone modification
58
broad histone mark
33
narrow histone mark
3
RNA binding protein
3
transcription factor
Date released
63
November, 2017
30
June, 2019
25
May, 2019
6
October, 2017
November, 2018
1
July, 2019
Available data
277
bam
249
bigWig
215
bed narrowPeak
125
bigBed narrowPeak
118
tagAlign
46
fastq
45
bed broadPeak
40
tsv
36
bed bed3+
36
bigBed broadPeak
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
125
Homo sapiens
Biosample type
114
tissue
11
primary cell
Organ
307
liver
125
brain
104
kidney
94
heart
88
pancreas
84
limb
83
vasculature
79
blood vessel
76
epithelium
47
musculature of body
42
blood
42
bodily fluid
27
connective tissue
26
nerve
25
artery
18
ureter
13
vein
9
adipose tissue
9
spleen
6
eye
0
embryo
Project
125
AMP
Genome assembly (visualization)
124
GRCh38
63
hg19
Lab
125
AMP-T2D consortium
Audit category:
3
missing controlled_by
month_released!
November, 2018
BIOSAMPLE
ASSAY
125 results
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ChIP-seq
DNase-seq
FAIRE-seq
tissue
brain
6
12
layer of hippocampus
16
caudate nucleus
12
1
temporal lobe
13
angular gyrus
12
+ See 14 more…
primary cell
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
1
astrocyte of the hippocampus
1
brain pericyte
1
See all biosamples
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