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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
253
ChIP-seq
32
DNase-seq
22
total RNA-seq
5
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
253
DNA binding
38
DNA accessibility
29
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
211
histone
211
histone modification
125
narrow histone mark
86
broad histone mark
42
control
3
RNA binding protein
3
transcription factor
Date released
128
October, 2019
91
November, 2017
30
June, 2019
28
May, 2019
18
July, 2019
16
October, 2017
13
February, 2020
2
March, 2020
November, 2018
1
February, 2023
Available data
283
bam
251
bigWig
228
bed narrowPeak
151
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
31
tsv
19
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
327
Homo sapiens
Biosample type
306
tissue
21
primary cell
Organ
939
pancreas
738
liver
683
connective tissue
524
epithelium
490
adipose tissue
393
heart
354
kidney
284
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
61
eye
54
blood
54
bodily fluid
43
nerve
37
embryo
22
vein
20
lung
18
ureter
16
skeleton
16
spleen
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
327
AMP
Genome assembly (visualization)
246
GRCh38
193
hg19
Lab
327
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
month_released!
November, 2018
BIOSAMPLE
ASSAY
327 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
tibial nerve
35
2
5
1
brain
20
12
1
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
+ See 78 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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