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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
215
ChIP-seq
30
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
pCHi-C
3
single cell RNA-seq
2
RRBS
1
FAIRE-seq
Assay category
215
DNA binding
35
DNA accessibility
24
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
31
control
RNA binding protein
3
transcription factor
Date released
88
November, 2017
86
October, 2019
30
June, 2019
28
May, 2019
18
July, 2019
16
October, 2017
12
February, 2020
3
March, 2020
November, 2018
1
February, 2023
Available data
238
bam
217
bigWig
198
bed narrowPeak
122
bigBed narrowPeak
118
tagAlign
42
bed broadPeak
33
bed bed3+
33
bigBed broadPeak
27
tsv
16
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
282
Homo sapiens
Biosample type
264
tissue
18
primary cell
Organ
930
pancreas
699
liver
673
connective tissue
516
epithelium
485
adipose tissue
382
heart
351
kidney
281
brain
231
vasculature
226
blood vessel
159
bone element
140
artery
122
limb
96
musculature of body
60
eye
46
blood
46
bodily fluid
43
nerve
37
embryo
22
vein
20
lung
18
ureter
16
skeleton
16
spleen
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
282
AMP
Genome assembly (visualization)
212
GRCh38
159
hg19
Lab
282
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
4
missing controlled_by
month_released!
November, 2018
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
282 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
pCHi-C
single cell RNA-seq
RRBS
FAIRE-seq
tissue
brain
20
12
1
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
1
+ See 78 more…
primary cell
astrocyte of the cerebellum
2
1
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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