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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
203
ChIP-seq
32
DNase-seq
17
total RNA-seq
4
small RNA-seq
ATAC-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
203
DNA binding
33
DNA accessibility
24
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
175
histone
175
histone modification
115
narrow histone mark
60
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
85
October, 2019
30
June, 2019
28
May, 2019
17
July, 2019
October, 2017
12
February, 2020
2
March, 2020
2
November, 2018
Available data
233
bam
214
bigWig
197
bed narrowPeak
121
bigBed narrowPeak
104
tagAlign
44
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
11
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
tagAlign bed3+
Organism
267
Homo sapiens
Biosample type
246
tissue
21
primary cell
Organ
794
pancreas
768
liver
659
connective tissue
485
adipose tissue
421
epithelium
346
heart
279
kidney
267
brain
190
vasculature
184
blood vessel
147
bone element
114
limb
96
artery
95
musculature of body
68
blood
68
bodily fluid
42
nerve
37
embryo
33
eye
24
spleen
22
vein
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
267
AMP
Genome assembly (visualization)
209
GRCh38
157
hg19
Lab
267
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
month_released!
October, 2017
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
267 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
layer of hippocampus
23
brain
5
14
1
1
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
1
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primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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