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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
117
ChIP-seq
22
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
1
ATAC-seq
1
FAIRE-seq
Assay category
117
DNA binding
24
DNA accessibility
12
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
111
histone
111
histone modification
91
narrow histone mark
20
broad histone mark
6
control
3
RNA binding protein
3
transcription factor
Date released
78
October, 2019
25
May, 2019
20
June, 2019
17
July, 2019
15
November, 2017
October, 2017
2
November, 2018
1
February, 2023
Available data
153
bigWig
149
bam
135
bed narrowPeak
59
bigBed narrowPeak
37
tagAlign
34
bed broadPeak
28
bigBed broadPeak
25
bed bed3+
12
tsv
11
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
158
Homo sapiens
Biosample type
137
tissue
21
primary cell
Organ
653
pancreas
625
liver
588
connective tissue
425
adipose tissue
311
epithelium
188
heart
165
vasculature
159
blood vessel
158
brain
129
kidney
96
limb
93
artery
73
musculature of body
70
bone element
55
blood
55
bodily fluid
34
eye
31
nerve
29
embryo
18
ureter
17
vein
13
spleen
12
skeleton
2
pericardium
1
pituitary gland
Project
158
AMP
Genome assembly (visualization)
210
GRCh38
158
hg19
Lab
158
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
month_released!
October, 2017
BIOSAMPLE
ASSAY
158 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
ATAC-seq
FAIRE-seq
tissue
brain
5
14
1
1
1
temporal lobe
13
1
1
angular gyrus
14
frontal cortex
2
1
1
1
superior frontal gyrus
4
+ See 66 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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