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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
17
total RNA-seq
4
small RNA-seq
3
ATAC-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
Assay category
39
DNA binding
24
Transcription
3
3D chromatin structure
3
DNA accessibility
2
DNA methylation
Target of assay
28
control
14
histone
14
histone modification
10
narrow histone mark
4
broad histone mark
Date released
27
November, 2017
17
July, 2019
12
February, 2020
11
October, 2019
October, 2017
3
May, 2019
2
March, 2020
1
February, 2023
Available data
234
bam
215
bigWig
bed narrowPeak
121
bigBed narrowPeak
104
tagAlign
44
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
11
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
73
Homo sapiens
Biosample type
63
tissue
10
primary cell
Organ
731
pancreas
609
connective tissue
478
adipose tissue
373
epithelium
350
liver
202
heart
171
kidney
151
bone element
103
vasculature
101
blood vessel
73
brain
67
artery
36
musculature of body
30
limb
28
eye
23
embryo
20
lung
16
nerve
15
blood
15
bodily fluid
11
spleen
9
vein
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
73
AMP
Genome assembly (visualization)
23
hg19
15
GRCh38
Lab
73
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
October, 2017
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
73 results
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ChIP-seq
total RNA-seq
small RNA-seq
ATAC-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
tissue
cingulate gyrus
7
layer of hippocampus
6
substantia nigra
4
1
caudate nucleus
3
1
cerebellum (Hemisphere)
2
1
1
+ See 24 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
+ See 1 more…
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