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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
86
ChIP-seq
31
DNase-seq
17
total RNA-seq
4
small RNA-seq
3
ATAC-seq
3
single cell RNA-seq
2
Hi-C
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
86
DNA binding
35
DNA accessibility
24
Transcription
2
3D chromatin structure
2
DNA methylation
Target of assay
174
histone
174
histone modification
narrow histone mark
60
broad histone mark
27
control
2
RNA binding protein
2
transcription factor
Date released
58
November, 2017
29
June, 2019
18
May, 2019
17
July, 2019
October, 2017
12
February, 2020
12
October, 2019
2
March, 2020
2
November, 2018
1
February, 2023
Available data
127
bam
106
bigWig
90
bed narrowPeak
87
bigBed narrowPeak
52
tagAlign
35
bed broadPeak
33
bed bed3+
33
bigBed broadPeak
26
tsv
6
fastq
2
bed bedMethyl
2
bigBed bedMethyl
2
hdf5
1
bed bed3
Organism
151
Homo sapiens
Biosample type
137
tissue
14
primary cell
Organ
868
pancreas
731
liver
650
connective tissue
478
adipose tissue
475
epithelium
353
heart
339
kidney
210
vasculature
blood vessel
159
bone element
155
brain
135
artery
107
limb
83
musculature of body
68
blood
68
bodily fluid
58
eye
35
nerve
29
embryo
22
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
151
AMP
Genome assembly (visualization)
102
GRCh38
63
hg19
Lab
151
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
October, 2017
organ_slims!
blood vessel
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
151 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
ATAC-seq
single cell RNA-seq
Hi-C
RRBS
pCHi-C
FAIRE-seq
tissue
brain
3
14
1
1
1
layer of hippocampus
15
caudate nucleus
10
1
1
temporal lobe
10
1
1
substantia nigra
10
1
+ See 29 more…
primary cell
astrocyte of the cerebellum
2
1
1
choroid plexus epithelial cell
2
1
1
brain pericyte
1
1
cerebellar granule cell
2
Purkinje cell
1
+ See 1 more…
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