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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
188
ChIP-seq
32
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
single cell RNA-seq
1
ATAC-seq
1
FAIRE-seq
Assay category
188
DNA binding
34
DNA accessibility
12
Transcription
Target of assay
160
histone
160
histone modification
104
narrow histone mark
56
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
83
October, 2019
78
November, 2017
30
June, 2019
28
May, 2019
13
July, 2019
October, 2017
2
November, 2018
Available data
234
bam
215
bigWig
197
bed narrowPeak
121
bigBed narrowPeak
104
tagAlign
44
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
11
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
234
Homo sapiens
Biosample type
217
tissue
17
primary cell
Organ
685
pancreas
681
liver
592
connective tissue
441
adipose tissue
317
epithelium
234
brain
211
heart
185
vasculature
180
blood vessel
144
kidney
114
limb
102
artery
66
bone element
60
blood
60
bodily fluid
57
musculature of body
42
nerve
36
embryo
23
spleen
20
vein
18
ureter
8
skeleton
7
eye
1
pericardium
1
pituitary gland
Project
234
AMP
Genome assembly (visualization)
208
GRCh38
149
hg19
Lab
234
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
month_released!
October, 2017
organ_slims!
large intestine
BIOSAMPLE
ASSAY
234 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
single cell RNA-seq
ATAC-seq
FAIRE-seq
tissue
brain
5
14
1
layer of hippocampus
20
temporal lobe
15
1
1
angular gyrus
15
caudate nucleus
14
1
+ See 71 more…
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
cerebellar granule cell
2
Purkinje cell
1
+ See 2 more…
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