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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
203
ChIP-seq
84
RNA microarray
79
total RNA-seq
32
DNase-seq
15
ATAC-seq
4
small RNA-seq
3
Hi-C
3
pCHi-C
3
single cell RNA-seq
2
RRBS
1
FAIRE-seq
Assay category
203
DNA binding
86
Transcription
48
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
175
histone
175
histone modification
115
narrow histone mark
60
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
150
February, 2021
91
November, 2017
86
October, 2019
30
June, 2019
28
May, 2019
18
July, 2019
October, 2017
12
February, 2020
9
February, 2023
2
March, 2020
2
November, 2018
1
May, 2021
Available data
300
bam
273
bigWig
205
bed narrowPeak
121
bigBed narrowPeak
104
tagAlign
88
txt
84
tsv
44
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
11
fastq
5
bed bed3
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
tagAlign bed3+
Organism
429
Homo sapiens
Biosample type
407
tissue
22
primary cell
Organ
pancreas
791
liver
683
connective tissue
524
epithelium
490
adipose tissue
393
heart
354
kidney
270
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
24
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
428
AMP
1
T1D
Genome assembly (visualization)
276
GRCh38
228
hg19
Lab
428
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
87
inconsistent ontology term
month_released!
October, 2017
organ_slims!
pancreas
BIOSAMPLE
ASSAY
429 results
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ChIP-seq
RNA microarray
total RNA-seq
DNase-seq
ATAC-seq
small RNA-seq
Hi-C
pCHi-C
single cell RNA-seq
RRBS
FAIRE-seq
tissue
bone element
84
bone tissue
58
layer of hippocampus
23
brain
5
1
14
1
1
caudate nucleus
15
1
1
+ See 91 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 3 more…
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