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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
223
ChIP-seq
33
DNase-seq
17
total RNA-seq
4
small RNA-seq
3
ATAC-seq
3
Hi-C
3
pCHi-C
3
single cell RNA-seq
2
RRBS
2
WGBS
1
FAIRE-seq
Assay category
223
DNA binding
37
DNA accessibility
24
Transcription
4
DNA methylation
3
3D chromatin structure
Target of assay
181
histone
181
histone modification
117
narrow histone mark
64
broad histone mark
36
control
9
transcription factor
3
RNA binding protein
3
other context
3
other post-translational modification
Date released
91
November, 2017
86
October, 2019
30
June, 2019
28
May, 2019
18
July, 2019
October, 2017
12
February, 2020
11
November, 2018
7
December, 2018
7
January, 2019
3
March, 2020
1
February, 2023
Available data
257
bam
230
bigWig
210
bed narrowPeak
134
bigBed narrowPeak
104
tagAlign
45
bed broadPeak
39
bigBed broadPeak
36
bed bed3+
34
fastq
27
tsv
4
bed bedMethyl
4
bigBed bedMethyl
3
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
294
Homo sapiens
Biosample type
273
tissue
21
primary cell
Organ
941
pancreas
791
liver
683
connective tissue
524
epithelium
490
adipose tissue
393
heart
354
kidney
270
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
24
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
294
AMP
Genome assembly (visualization)
225
GRCh38
171
hg19
Lab
294
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
month_released!
October, 2017
BIOSAMPLE
ASSAY
294 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
ATAC-seq
Hi-C
pCHi-C
single cell RNA-seq
RRBS
WGBS
FAIRE-seq
tissue
spleen
20
1
1
2
layer of hippocampus
23
brain
5
14
1
1
1
caudate nucleus
15
1
1
substantia nigra
16
1
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primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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