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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
220
ChIP-seq
34
DNase-seq
17
total RNA-seq
5
Hi-C
4
small RNA-seq
3
ATAC-seq
3
single cell RNA-seq
2
FAIRE-seq
2
RRBS
2
pCHi-C
Assay category
220
DNA binding
39
DNA accessibility
24
Transcription
5
3D chromatin structure
2
DNA methylation
Target of assay
190
histone
190
histone modification
121
narrow histone mark
69
broad histone mark
30
control
3
RNA binding protein
3
transcription factor
Date released
107
October, 2019
91
November, 2017
30
June, 2019
28
May, 2019
18
July, 2019
October, 2017
12
February, 2020
3
March, 2020
2
November, 2018
1
February, 2023
Available data
254
bam
230
bigWig
210
bed narrowPeak
134
bigBed narrowPeak
104
tagAlign
48
bed broadPeak
42
bigBed broadPeak
37
bed bed3+
26
tsv
11
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
2
hic
1
bed bed3
1
bedpe bed3+
1
tagAlign bed3+
1
tar
Organism
292
Homo sapiens
Biosample type
249
tissue
43
primary cell
Organ
941
pancreas
791
liver
683
connective tissue
524
epithelium
490
adipose tissue
393
heart
354
kidney
270
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
24
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
292
AMP
Genome assembly (visualization)
222
GRCh38
175
hg19
Lab
292
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
1
audit script error
month_released!
October, 2017
BIOSAMPLE
ASSAY
292 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
small RNA-seq
ATAC-seq
single cell RNA-seq
FAIRE-seq
RRBS
pCHi-C
tissue
layer of hippocampus
23
brain
5
14
1
1
1
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
1
+ See 77 more…
primary cell
endothelial cell of umbilical vein
17
2
2
1
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
+ See 3 more…
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