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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
143
ChIP-seq
32
DNase-seq
17
total RNA-seq
4
small RNA-seq
3
ATAC-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
143
DNA binding
36
DNA accessibility
24
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
175
histone
175
histone modification
115
narrow histone mark
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
83
October, 2019
49
November, 2017
30
June, 2019
18
July, 2019
13
May, 2019
12
February, 2020
October, 2017
2
March, 2020
2
November, 2018
1
February, 2023
Available data
178
bam
160
bigWig
141
bed narrowPeak
69
tagAlign
68
bigBed narrowPeak
42
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
11
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
210
Homo sapiens
Biosample type
189
tissue
21
primary cell
Organ
863
pancreas
749
liver
639
connective tissue
480
epithelium
470
adipose tissue
339
kidney
316
heart
210
brain
191
vasculature
185
blood vessel
159
bone element
127
artery
88
limb
76
musculature of body
69
blood
69
bodily fluid
61
eye
33
embryo
27
nerve
20
lung
20
spleen
18
ureter
16
skeleton
13
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
210
AMP
Genome assembly (visualization)
154
GRCh38
138
hg19
Lab
210
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
month_released!
October, 2017
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
210 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
ATAC-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
2
14
1
1
1
layer of hippocampus
11
caudate nucleus
7
1
1
substantia nigra
8
1
temporal lobe
7
1
1
+ See 77 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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