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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
143
ChIP-seq
32
DNase-seq
17
total RNA-seq
4
small RNA-seq
ATAC-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
143
DNA binding
33
DNA accessibility
24
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
175
histone
175
histone modification
115
narrow histone mark
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
82
October, 2019
49
November, 2017
30
June, 2019
17
July, 2019
13
May, 2019
12
February, 2020
October, 2017
2
March, 2020
2
November, 2018
Available data
177
bam
159
bigWig
141
bed narrowPeak
69
tagAlign
68
bigBed narrowPeak
42
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
11
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
tagAlign bed3+
Organism
207
Homo sapiens
Biosample type
186
tissue
21
primary cell
Organ
726
liver
716
pancreas
615
connective tissue
465
adipose tissue
377
epithelium
289
heart
264
kidney
207
brain
147
bone element
145
vasculature
139
blood vessel
82
artery
80
limb
75
musculature of body
68
blood
68
bodily fluid
33
embryo
33
eye
26
nerve
20
lung
20
spleen
18
ureter
13
vein
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
207
AMP
Genome assembly (visualization)
153
GRCh38
137
hg19
Lab
207
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
month_released!
October, 2017
target.investigated_as!
broad histone mark
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
207 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
2
14
1
1
layer of hippocampus
11
caudate nucleus
7
1
1
substantia nigra
8
1
temporal lobe
7
1
1
+ See 75 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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