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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
140
ChIP-seq
32
DNase-seq
17
total RNA-seq
4
small RNA-seq
3
ATAC-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
140
DNA binding
36
DNA accessibility
24
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
175
histone
175
histone modification
115
narrow histone mark
broad histone mark
28
control
3
RNA binding protein
transcription factor
Date released
83
October, 2019
46
November, 2017
30
June, 2019
18
July, 2019
13
May, 2019
12
February, 2020
October, 2017
2
March, 2020
2
November, 2018
1
February, 2023
Available data
175
bam
157
bigWig
138
bed narrowPeak
69
tagAlign
65
bigBed narrowPeak
39
bed broadPeak
35
bed bed3+
35
bigBed broadPeak
26
tsv
8
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
207
Homo sapiens
Biosample type
189
tissue
18
primary cell
Organ
844
pancreas
599
connective tissue
471
epithelium
453
adipose tissue
411
liver
329
kidney
319
heart
207
brain
182
vasculature
177
blood vessel
159
bone element
122
artery
88
limb
76
musculature of body
60
eye
30
embryo
27
nerve
20
lung
18
blood
18
bodily fluid
18
ureter
16
skeleton
14
spleen
13
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
207
AMP
Genome assembly (visualization)
151
GRCh38
135
hg19
Lab
207
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
month_released!
October, 2017
target.investigated_as!
broad histone mark
transcription factor
BIOSAMPLE
ASSAY
207 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
ATAC-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
2
14
1
1
1
layer of hippocampus
11
caudate nucleus
7
1
1
substantia nigra
8
1
temporal lobe
7
1
1
+ See 77 more…
primary cell
astrocyte of the cerebellum
2
1
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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