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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
7
Hi-C
4
small RNA-seq
4
total RNA-seq
3
single cell RNA-seq
2
RRBS
1
ATAC-seq
1
FAIRE-seq
1
WGBS
Assay category
11
Transcription
7
3D chromatin structure
3
DNA methylation
2
DNA accessibility
Target of assay
3
control
Date released
155
October, 2019
91
November, 2017
62
June, 2019
35
May, 2019
23
July, 2019
16
October, 2017
15
February, 2020
6
February, 2021
2
March, 2020
2
November, 2018
1
February, 2023
Available data
17
bigWig
14
bam
11
tsv
3
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
hdf5
1
bed narrowPeak
1
bigBed narrowPeak
Organism
23
Homo sapiens
Biosample type
16
tissue
7
primary cell
Organ
25
heart
18
brain
18
connective tissue
13
epithelium
12
adipose tissue
12
vasculature
11
blood vessel
11
kidney
10
liver
10
musculature of body
6
pancreas
5
limb
3
artery
2
pericardium
1
eye
Project
23
AMP
Genome assembly (visualization)
17
hg19
13
GRCh38
Lab
23
AMP-T2D consortium
BIOSAMPLE
ASSAY
23 results
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Hi-C
small RNA-seq
total RNA-seq
single cell RNA-seq
RRBS
ATAC-seq
FAIRE-seq
WGBS
tissue
gastrocnemius medialis
4
frontal cortex
1
1
1
diencephalon
1
1
temporal lobe
1
1
brain
1
+ See 4 more…
primary cell
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
+ See 1 more…
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