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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
ChIP-seq
5
DNase-seq
3
Hi-C
1
RRBS
Assay category
6
DNA binding
5
DNA accessibility
3
3D chromatin structure
1
DNA methylation
Target of assay
control
3
RNA binding protein
3
histone
3
histone modification
3
narrow histone mark
3
transcription factor
Date released
6
November, 2017
5
June, 2019
4
July, 2019
Available data
14
bigWig
11
bam
11
bed broadPeak
11
bed narrowPeak
11
bigBed broadPeak
11
bigBed narrowPeak
8
bed bed3+
6
fastq
3
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
Organism
15
Homo sapiens
Biosample type
240
tissue
15
primary cell
Organ
385
epithelium
334
pancreas
36
connective tissue
33
kidney
33
vasculature
28
blood vessel
20
vein
15
brain
13
liver
12
musculature of body
11
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
15
AMP
Genome assembly (visualization)
15
hg19
11
GRCh38
Lab
15
AMP-T2D consortium
organ_slims!
mammary gland
target.investigated_as!
control
BIOSAMPLE
ASSAY
15 results
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ChIP-seq
DNase-seq
Hi-C
RRBS
primary cell
astrocyte of the cerebellum
2
1
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
brain pericyte
1
1
astrocyte of the hippocampus
1
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