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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
215
ChIP-seq
31
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
2
Hi-C
2
RRBS
1
FAIRE-seq
Assay category
215
DNA binding
36
DNA accessibility
24
Transcription
2
3D chromatin structure
2
DNA methylation
Target of assay
186
histone
186
histone modification
116
narrow histone mark
70
broad histone mark
30
control
2
RNA binding protein
2
transcription factor
Date released
88
November, 2017
86
October, 2019
29
June, 2019
28
May, 2019
17
July, 2019
16
October, 2017
12
February, 2020
March, 2020
2
November, 2018
1
February, 2023
Available data
239
bam
217
bigWig
200
bed narrowPeak
124
bigBed narrowPeak
118
tagAlign
44
bed broadPeak
35
bigBed broadPeak
33
bed bed3+
24
tsv
18
fastq
2
bed bedMethyl
2
bigBed bedMethyl
2
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
279
Homo sapiens
Biosample type
263
tissue
16
primary cell
Organ
932
pancreas
788
liver
682
connective tissue
518
epithelium
490
adipose tissue
352
kidney
346
heart
284
brain
232
vasculature
blood vessel
159
bone element
141
artery
122
limb
91
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
24
spleen
21
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
spinal cord
1
thymus
Project
279
AMP
Genome assembly (visualization)
214
GRCh38
159
hg19
Lab
279
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
organ_slims!
blood vessel
month_released!
March, 2020
BIOSAMPLE
ASSAY
279 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
Hi-C
RRBS
FAIRE-seq
tissue
brain
20
14
1
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
1
+ See 76 more…
primary cell
astrocyte of the cerebellum
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
Purkinje cell
1
+ See 1 more…
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