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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
DNase-seq
15
ChIP-seq
Assay category
31
DNA accessibility
15
DNA binding
Target of assay
12
histone
12
histone modification
8
narrow histone mark
4
broad histone mark
3
RNA binding protein
3
transcription factor
Date released
29
June, 2019
12
November, 2017
3
October, 2017
2
November, 2018
Available data
242
bam
220
bigWig
202
bed narrowPeak
126
bigBed narrowPeak
118
tagAlign
46
bed broadPeak
37
bigBed broadPeak
33
bed bed3+
26
tsv
21
fastq
2
bed bedMethyl
2
bigBed bedMethyl
2
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
46
Homo sapiens
Biosample type
36
tissue
10
primary cell
Organ
78
kidney
63
liver
47
brain
46
musculature of body
36
limb
30
heart
22
epithelium
21
pancreas
18
ureter
17
vasculature
13
blood vessel
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
46
AMP
Genome assembly (visualization)
45
GRCh38
36
hg19
Lab
46
AMP-T2D consortium
Audit category:
2
missing controlled_by
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
46 results
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DNase-seq
ChIP-seq
tissue
brain
14
3
caudate nucleus
1
1
cingulate gyrus
2
frontal cortex
2
middle frontal area 46
2
+ See 11 more…
primary cell
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
astrocyte of the hippocampus
1
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