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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
ChIP-seq
31
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
2
Hi-C
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
127
DNA binding
36
DNA accessibility
24
Transcription
2
3D chromatin structure
2
DNA methylation
Target of assay
114
histone
114
histone modification
86
narrow histone mark
28
broad histone mark
16
control
Date released
November, 2017
86
October, 2019
29
June, 2019
28
May, 2019
17
July, 2019
16
October, 2017
12
February, 2020
2
March, 2020
2
November, 2018
1
February, 2023
Available data
164
bam
154
bigWig
138
bed narrowPeak
63
bigBed narrowPeak
52
tagAlign
34
bed broadPeak
33
bed bed3+
31
bigBed broadPeak
26
tsv
12
fastq
2
bed bedMethyl
2
bigBed bedMethyl
2
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
193
Homo sapiens
Biosample type
183
tissue
10
primary cell
Organ
946
pancreas
connective tissue
518
epithelium
491
adipose tissue
476
liver
354
kidney
353
heart
230
vasculature
227
blood vessel
195
brain
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
193
AMP
Genome assembly (visualization)
153
GRCh38
147
hg19
Lab
193
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
organ_slims!
connective tissue
month_released!
November, 2017
BIOSAMPLE
ASSAY
193 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
Hi-C
RRBS
pCHi-C
FAIRE-seq
tissue
brain
20
14
1
1
1
temporal lobe
15
1
1
angular gyrus
15
cerebellum (Hemisphere)
2
1
1
1
1
frontal cortex
2
2
1
1
+ See 75 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
+ See 1 more…
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