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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
124
ChIP-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
2
RRBS
2
pCHi-C
Assay category
124
DNA binding
24
Transcription
4
DNA accessibility
3D chromatin structure
2
DNA methylation
Target of assay
96
histone
96
histone modification
84
narrow histone mark
31
control
12
broad histone mark
Date released
86
October, 2019
28
November, 2017
14
July, 2019
12
February, 2020
10
October, 2017
3
May, 2019
2
March, 2020
1
February, 2023
Available data
243
bam
219
bigWig
203
bed narrowPeak
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
32
bed bed3+
26
tsv
21
fastq
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
156
Homo sapiens
Biosample type
149
tissue
7
primary cell
Organ
846
pancreas
655
connective tissue
481
adipose tissue
440
epithelium
429
liver
296
heart
249
kidney
159
bone element
156
brain
148
vasculature
146
blood vessel
116
artery
55
eye
43
musculature of body
37
embryo
34
limb
20
lung
17
nerve
16
skeleton
15
blood
15
bodily fluid
12
spleen
7
vein
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
156
AMP
Genome assembly (visualization)
96
hg19
91
GRCh38
Lab
156
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
1
missing controlled_by
organ_slims!
gonad
files.file_type!
bigBed narrowPeak
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
156 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
RRBS
pCHi-C
tissue
brain
14
1
1
1
cingulate gyrus
8
layer of hippocampus
7
cerebellum (Hemisphere)
3
1
1
1
substantia nigra
5
1
+ See 72 more…
primary cell
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
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