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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
46
ChIP-seq
2
ATAC-seq
2
RRBS
2
pCHi-C
Assay category
46
DNA binding
2
DNA accessibility
2
DNA methylation
Target of assay
25
control
21
histone
21
histone modification
11
narrow histone mark
10
broad histone mark
Date released
25
November, 2017
February, 2020
10
October, 2019
9
October, 2017
3
May, 2019
2
July, 2019
2
March, 2020
1
February, 2023
Available data
243
bam
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
21
fastq
14
tsv
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
52
Homo sapiens
Biosample type
51
tissue
1
primary cell
Organ
322
pancreas
223
epithelium
223
kidney
168
liver
166
heart
112
connective tissue
101
bone element
78
vasculature
77
blood vessel
64
adipose tissue
54
artery
54
eye
52
brain
28
limb
26
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
11
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
52
AMP
Genome assembly (visualization)
5
hg19
3
GRCh38
Lab
52
AMP-T2D consortium
Audit category:
1
missing controlled_by
organ_slims!
intestine
month_released!
February, 2020
files.file_type!
bigWig
BIOSAMPLE
ASSAY
52 results
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ChIP-seq
ATAC-seq
RRBS
pCHi-C
tissue
brain
9
1
1
cingulate gyrus
8
layer of hippocampus
6
substantia nigra
4
caudate nucleus
3
+ See 15 more…
primary cell
choroid plexus epithelial cell
1
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