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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
201
ChIP-seq
32
DNase-seq
16
total RNA-seq
4
small RNA-seq
3
ATAC-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
201
DNA binding
36
DNA accessibility
23
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
173
histone
173
histone modification
113
narrow histone mark
60
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
84
October, 2019
30
June, 2019
28
May, 2019
18
July, 2019
October, 2017
11
February, 2020
2
March, 2020
2
November, 2018
1
February, 2023
Available data
232
bam
213
bigWig
195
bed narrowPeak
121
bigBed narrowPeak
104
tagAlign
44
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
25
tsv
11
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
267
Homo sapiens
Biosample type
246
tissue
21
primary cell
Organ
860
pancreas
790
liver
664
connective tissue
489
adipose tissue
433
epithelium
387
heart
331
kidney
267
brain
235
vasculature
230
blood vessel
141
artery
121
limb
87
musculature of body
75
bone element
69
blood
69
bodily fluid
61
eye
43
nerve
31
embryo
24
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
Project
267
AMP
Genome assembly (visualization)
208
GRCh38
156
hg19
Lab
267
AMP-T2D consortium
Audit category:
inconsistent ontology term
organ_slims!
intestine
month_released!
October, 2017
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
267 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
ATAC-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
layer of hippocampus
23
brain
5
14
1
1
1
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
1
+ See 75 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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