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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
209
ChIP-seq
84
RNA microarray
79
total RNA-seq
27
DNase-seq
16
ATAC-seq
4
small RNA-seq
2
pCHi-C
1
FAIRE-seq
1
RRBS
Assay category
209
DNA binding
83
Transcription
44
DNA accessibility
1
DNA methylation
Target of assay
184
histone
184
histone modification
114
narrow histone mark
70
broad histone mark
25
control
Date released
150
February, 2021
86
October, 2019
82
November, 2017
28
May, 2019
25
June, 2019
16
October, 2017
12
February, 2020
11
July, 2019
9
February, 2023
2
March, 2020
2
November, 2018
Available data
292
bam
260
bigWig
200
bed narrowPeak
118
tagAlign
116
bigBed narrowPeak
88
txt
81
tsv
36
bed broadPeak
27
bed bed3+
27
bigBed broadPeak
12
fastq
5
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
423
Homo sapiens
Biosample type
423
tissue
primary cell
Organ
777
liver
645
connective tissue
600
pancreas
489
adipose tissue
380
heart
318
kidney
265
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
118
epithelium
82
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
423
AMP
Genome assembly (visualization)
269
GRCh38
213
hg19
Lab
423
AMP-T2D consortium
Audit category:
87
inconsistent ontology term
Audit category:
4
missing controlled_by
organ_slims!
intestine
biosample_type!
primary cell
BIOSAMPLE
ASSAY
423 results
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ChIP-seq
RNA microarray
total RNA-seq
DNase-seq
ATAC-seq
small RNA-seq
pCHi-C
FAIRE-seq
RRBS
tissue
bone element
84
bone tissue
58
brain
20
1
14
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
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