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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
233
ChIP-seq
34
DNase-seq
16
total RNA-seq
5
Hi-C
4
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
2
FAIRE-seq
2
RRBS
2
pCHi-C
Assay category
233
DNA binding
40
DNA accessibility
23
Transcription
5
3D chromatin structure
2
DNA methylation
Target of assay
200
histone
200
histone modification
121
narrow histone mark
79
broad histone mark
33
control
3
RNA binding protein
3
transcription factor
Date released
105
October, 2019
91
November, 2017
30
June, 2019
28
May, 2019
18
July, 2019
16
October, 2017
11
February, 2020
3
March, 2020
2
November, 2018
1
February, 2023
Available data
261
bam
235
bigWig
214
bed narrowPeak
140
bigBed narrowPeak
118
tagAlign
51
bed broadPeak
42
bigBed broadPeak
37
bed bed3+
25
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
2
hic
1
bed bed3
1
bedpe bed3+
1
tagAlign bed3+
1
tar
Organism
305
Homo sapiens
Biosample type
262
tissue
43
primary cell
Organ
865
pancreas
790
liver
665
connective tissue
490
adipose tissue
433
epithelium
387
heart
331
kidney
283
brain
235
vasculature
230
blood vessel
141
artery
121
limb
87
musculature of body
75
bone element
69
blood
69
bodily fluid
61
eye
43
nerve
31
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
Project
305
AMP
Genome assembly (visualization)
227
GRCh38
179
hg19
Lab
305
AMP-T2D consortium
Audit category:
inconsistent ontology term
1
audit script error
Audit category:
4
missing controlled_by
organ_slims!
lymph node
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
305 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
ATAC-seq
small RNA-seq
single cell RNA-seq
FAIRE-seq
RRBS
pCHi-C
tissue
brain
20
14
1
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
1
+ See 75 more…
primary cell
endothelial cell of umbilical vein
17
2
2
1
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
+ See 3 more…
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