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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ChIP-seq
12
total RNA-seq
10
DNase-seq
3
ATAC-seq
2
pCHi-C
Assay category
19
DNA binding
13
DNA accessibility
12
Transcription
Target of assay
13
control
6
histone
6
histone modification
5
broad histone mark
1
narrow histone mark
Date released
November, 2017
12
February, 2020
10
June, 2019
10
October, 2017
8
October, 2019
3
May, 2019
2
March, 2020
1
July, 2019
Available data
24
bam
15
tagAlign
14
tsv
12
bigWig
10
bed bed3+
10
bed broadPeak
10
bed narrowPeak
10
bigBed broadPeak
10
bigBed narrowPeak
4
fastq
Organism
46
Homo sapiens
Biosample type
46
tissue
Organ
288
pancreas
225
kidney
213
epithelium
165
heart
117
liver
95
connective tissue
89
bone element
71
blood vessel
71
vasculature
65
adipose tissue
48
artery
46
brain
27
eye
26
limb
23
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
46
AMP
Genome assembly (visualization)
154
GRCh38
hg19
Lab
46
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
organ_slims!
mammary gland
month_released!
November, 2017
assembly!
hg19
BIOSAMPLE
ASSAY
46 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
pCHi-C
tissue
brain
9
Ammon's horn
1
1
1
cerebellum (Hemisphere)
1
1
1
putamen
1
1
1
caudate nucleus
1
1
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