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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
DNase-seq
18
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
RRBS
3
single cell RNA-seq
2
pCHi-C
1
FAIRE-seq
Assay category
218
DNA binding
25
Transcription
5
DNA accessibility
3
3D chromatin structure
3
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
86
October, 2019
28
May, 2019
20
July, 2019
16
October, 2017
12
February, 2020
2
March, 2020
1
February, 2023
Available data
212
bam
191
bigWig
171
bed narrowPeak
118
tagAlign
95
bigBed narrowPeak
27
tsv
19
fastq
15
bed broadPeak
6
bigBed broadPeak
3
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
256
Homo sapiens
Biosample type
239
tissue
17
primary cell
Organ
938
pancreas
785
liver
675
connective tissue
505
epithelium
489
adipose tissue
363
heart
273
kidney
254
brain
225
vasculature
221
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
63
musculature of body
57
eye
41
nerve
37
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
256
AMP
Genome assembly (visualization)
186
GRCh38
144
hg19
Lab
256
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
organ_slims!
mammary gland
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
256 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
RRBS
single cell RNA-seq
pCHi-C
FAIRE-seq
tissue
brain
20
1
1
1
layer of hippocampus
23
substantia nigra
16
1
temporal lobe
15
1
1
caudate nucleus
15
1
+ See 73 more…
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
cerebellar granule cell
2
Purkinje cell
1
+ See 2 more…
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