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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
217
ChIP-seq
31
DNase-seq
17
total RNA-seq
4
small RNA-seq
3
ATAC-seq
3
single cell RNA-seq
2
Hi-C
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
217
DNA binding
35
DNA accessibility
24
Transcription
2
3D chromatin structure
2
DNA methylation
Target of assay
186
histone
186
histone modification
116
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
84
October, 2019
29
June, 2019
28
May, 2019
17
July, 2019
16
October, 2017
12
February, 2020
2
March, 2020
2
November, 2018
1
February, 2023
Available data
241
bam
219
bigWig
201
bed narrowPeak
126
bigBed narrowPeak
117
tagAlign
46
bed broadPeak
37
bigBed broadPeak
33
bed bed3+
26
tsv
21
fastq
2
bed bedMethyl
2
bigBed bedMethyl
2
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
282
Homo sapiens
Biosample type
263
tissue
19
primary cell
Organ
946
pancreas
791
liver
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
282
AMP
Genome assembly (visualization)
215
GRCh38
161
hg19
Lab
282
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
organ_slims!
small intestine
pituitary gland
connective tissue
BIOSAMPLE
ASSAY
282 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
ATAC-seq
single cell RNA-seq
Hi-C
RRBS
pCHi-C
FAIRE-seq
tissue
brain
20
14
1
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
1
+ See 75 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
cerebellar granule cell
2
Purkinje cell
1
+ See 1 more…
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