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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
ChIP-seq
32
DNase-seq
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
190
DNA binding
37
DNA accessibility
4
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
control
3
RNA binding protein
3
transcription factor
Date released
78
October, 2019
76
November, 2017
30
June, 2019
25
May, 2019
13
October, 2017
11
July, 2019
2
March, 2020
2
November, 2018
1
February, 2023
Available data
211
bigWig
208
bam
203
bed narrowPeak
127
bigBed narrowPeak
99
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
16
fastq
6
tsv
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
238
Homo sapiens
Biosample type
223
tissue
15
primary cell
Organ
494
liver
490
pancreas
363
epithelium
301
heart
282
kidney
238
brain
175
connective tissue
153
vasculature
148
blood vessel
98
limb
97
bone element
84
musculature of body
76
artery
69
adipose tissue
63
blood
63
bodily fluid
41
eye
27
nerve
20
lung
20
vein
18
ureter
17
spleen
16
embryo
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
small intestine
1
stomach
1
urinary bladder
Project
238
AMP
Genome assembly (visualization)
209
GRCh38
153
hg19
Lab
238
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
organ_slims!
small intestine
target.investigated_as!
control
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
238 results
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ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
Hi-C
RRBS
pCHi-C
FAIRE-seq
tissue
brain
17
14
1
1
layer of hippocampus
20
angular gyrus
14
caudate nucleus
13
1
substantia nigra
14
+ See 74 more…
primary cell
astrocyte of the cerebellum
2
1
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
brain pericyte
1
1
astrocyte of the hippocampus
1
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