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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ChIP-seq
12
total RNA-seq
3
Hi-C
2
ATAC-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
19
DNA binding
12
Transcription
3
3D chromatin structure
3
DNA accessibility
2
DNA methylation
Target of assay
control
19
histone
19
histone modification
10
narrow histone mark
9
broad histone mark
Date released
13
November, 2017
12
February, 2020
6
July, 2019
6
October, 2017
2
March, 2020
1
February, 2023
1
October, 2019
Available data
17
tagAlign
14
tsv
5
bigWig
3
bed bed3+
3
hdf5
2
bed bedMethyl
2
bed narrowPeak
2
bigBed bedMethyl
1
bam
1
bed bed3
1
bed broadPeak
1
bigBed narrowPeak
1
fastq
Organism
41
Homo sapiens
Biosample type
37
tissue
4
primary cell
Organ
260
pancreas
200
epithelium
153
liver
137
kidney
107
heart
93
bone element
84
connective tissue
54
eye
43
adipose tissue
41
brain
37
musculature of body
23
vasculature
22
blood vessel
20
lung
9
blood
9
bodily fluid
9
limb
8
skeleton
8
vein
5
gonad
5
ovary
4
artery
2
embryo
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
41
AMP
Genome assembly (visualization)
GRCh38
158
hg19
Lab
41
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
organ_slims!
small intestine
target.investigated_as!
control
assembly!
GRCh38
BIOSAMPLE
ASSAY
41 results
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ChIP-seq
total RNA-seq
Hi-C
ATAC-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
6
1
1
cingulate gyrus
6
layer of hippocampus
3
substantia nigra
2
1
Ammon's horn
1
1
+ See 13 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
choroid plexus epithelial cell
1
See all biosamples
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