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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
212
ChIP-seq
30
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
2
Hi-C
2
pCHi-C
1
FAIRE-seq
1
RRBS
Assay category
212
DNA binding
3
Transcription
Target of assay
185
histone
185
histone modification
115
narrow histone mark
70
broad histone mark
29
control
1
RNA binding protein
1
transcription factor
Date released
85
November, 2017
84
October, 2019
28
May, 2019
15
October, 2017
3
July, 2019
Available data
193
bam
169
bigWig
166
bed narrowPeak
118
tagAlign
90
bigBed narrowPeak
12
fastq
11
bed broadPeak
3
tsv
2
bigBed broadPeak
1
tagAlign bed3+
Organism
215
Homo sapiens
Biosample type
209
tissue
6
primary cell
Organ
553
liver
298
pancreas
227
heart
221
brain
199
epithelium
157
connective tissue
116
kidney
vasculature
105
blood vessel
73
adipose tissue
66
limb
60
blood
60
bodily fluid
40
musculature of body
36
artery
35
nerve
22
embryo
20
spleen
17
vein
9
lung
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
215
AMP
Genome assembly (visualization)
170
GRCh38
120
hg19
Lab
215
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
organ_slims!
vasculature
BIOSAMPLE
ASSAY
215 results
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Clear Filters
ChIP-seq
single cell RNA-seq
tissue
layer of hippocampus
23
brain
20
substantia nigra
16
angular gyrus
15
caudate nucleus
15
+ See 63 more…
primary cell
astrocyte of the cerebellum
3
cerebellar granule cell
2
Purkinje cell
1
See all biosamples
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