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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
272
ChIP-seq
30
DNase-seq
17
total RNA-seq
8
snATAC-seq
5
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
2
Hi-C
2
pCHi-C
1
FAIRE-seq
1
RRBS
Assay category
272
DNA binding
44
DNA accessibility
24
Transcription
2
3D chromatin structure
1
DNA methylation
Target of assay
186
histone
186
histone modification
116
narrow histone mark
70
broad histone mark
52
transcription factor
35
control
11
RNA binding protein
10
chromatin remodeller
Date released
86
October, 2019
85
November, 2017
28
June, 2019
28
May, 2019
27
December, 2018
18
January, 2019
17
November, 2018
16
July, 2019
16
October, 2017
12
February, 2020
8
January, 2021
2
March, 2020
1
February, 2023
1
January, 2018
Available data
295
bam
268
bigWig
251
bed narrowPeak
175
bigBed narrowPeak
118
tagAlign
75
fastq
41
bed broadPeak
32
bed bed3+
32
bigBed broadPeak
26
tsv
2
hdf5
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
345
Homo sapiens
Biosample type
265
tissue
61
cell line
19
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
337
AMP
8
T1D
Genome assembly (visualization)
265
GRCh38
209
hg19
Lab
337
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
1
inconsistent control
Audit category:
4
missing controlled_by
organ_slims!
vasculature
BIOSAMPLE
ASSAY
345 results
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ChIP-seq
DNase-seq
total RNA-seq
snATAC-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
Hi-C
pCHi-C
FAIRE-seq
RRBS
tissue
brain
20
14
1
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
1
+ See 77 more…
cell line
GM12878
60
1
primary cell
peripheral blood mononuclear cell
8
astrocyte of the cerebellum
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
Purkinje cell
1
+ See 1 more…
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