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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
142
ChIP-seq
30
DNase-seq
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
2
Hi-C
2
pCHi-C
1
FAIRE-seq
1
RRBS
Assay category
142
DNA binding
35
DNA accessibility
7
Transcription
2
3D chromatin structure
1
DNA methylation
Target of assay
185
histone
185
histone modification
115
narrow histone mark
broad histone mark
29
control
1
RNA binding protein
1
transcription factor
Date released
82
October, 2019
43
November, 2017
28
June, 2019
13
May, 2019
12
July, 2019
6
October, 2017
2
March, 2020
2
November, 2018
1
February, 2023
Available data
169
bam
148
bigWig
136
bed narrowPeak
73
tagAlign
63
bigBed narrowPeak
37
bed broadPeak
32
bed bed3+
32
bigBed broadPeak
9
fastq
9
tsv
2
hdf5
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
189
Homo sapiens
Biosample type
178
tissue
11
primary cell
Organ
560
liver
471
pancreas
349
epithelium
279
kidney
264
heart
199
brain
166
connective tissue
vasculature
124
blood vessel
97
bone element
81
limb
73
adipose tissue
71
artery
70
musculature of body
69
blood
69
bodily fluid
42
eye
22
nerve
21
spleen
20
lung
19
embryo
18
ureter
13
vein
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
189
AMP
Genome assembly (visualization)
145
GRCh38
124
hg19
Lab
189
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
missing controlled_by
organ_slims!
vasculature
target.investigated_as!
broad histone mark
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
189 results
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ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
Hi-C
pCHi-C
FAIRE-seq
RRBS
tissue
brain
7
14
1
1
layer of hippocampus
11
angular gyrus
8
caudate nucleus
7
1
substantia nigra
8
+ See 74 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the hippocampus
1
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