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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
415
total RNA-seq
236
ChIP-seq
31
DNase-seq
7
ATAC-seq
7
small RNA-seq
3
Hi-C
3
WGBS
3
pCHi-C
3
single cell RNA-seq
2
RRBS
1
FAIRE-seq
1
RNA microarray
Assay category
425
Transcription
236
DNA binding
39
DNA accessibility
5
DNA methylation
3
3D chromatin structure
Target of assay
208
histone
208
histone modification
124
narrow histone mark
84
broad histone mark
31
control
Date released
386
February, 2021
87
October, 2019
82
November, 2017
39
August, 2017
31
June, 2019
30
July, 2019
28
May, 2019
14
February, 2020
6
October, 2017
3
March, 2020
2
February, 2023
1
August, 2021
1
January, 2018
1
May, 2023
1
November, 2019
Available data
685
bam
647
bigWig
427
tsv
216
bed narrowPeak
137
bigBed narrowPeak
126
tagAlign
fastq
50
bed broadPeak
41
bed bed3+
40
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
3
hdf5
1
bed bed3
1
bedpe bed3+
1
tagAlign bed3+
Organism
711
Homo sapiens
Biosample type
698
tissue
14
primary cell
Organ
583
connective tissue
475
pancreas
447
adipose tissue
354
kidney
353
heart
326
liver
267
epithelium
265
brain
230
vasculature
227
blood vessel
159
bone element
141
artery
122
limb
94
musculature of body
61
eye
43
nerve
22
vein
20
lung
18
ureter
16
skeleton
10
embryo
9
blood
9
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
712
AMP
Genome assembly (visualization)
603
GRCh38
552
hg19
Lab
712
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
files.file_type!
fastq
BIOSAMPLE
ASSAY
712 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
Hi-C
WGBS
pCHi-C
single cell RNA-seq
RRBS
FAIRE-seq
RNA microarray
tissue
adipose tissue
382
3
1
subcutaneous abdominal adipose tissue
36
3
brain
1
11
12
1
1
layer of hippocampus
23
caudate nucleus
1
15
1
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primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
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