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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
ChIP-seq
34
DNase-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
100
DNA binding
37
DNA accessibility
Target of assay
92
histone
92
histone modification
58
broad histone mark
34
narrow histone mark
8
RNA binding protein
8
transcription factor
Date released
63
November, 2017
31
June, 2019
25
May, 2019
6
October, 2017
5
October, 2018
3
November, 2018
2
August, 2017
1
July, 2019
1
October, 2019
Available data
685
bam
647
bigWig
427
tsv
216
bed narrowPeak
137
bigBed narrowPeak
126
tagAlign
65
fastq
50
bed broadPeak
41
bed bed3+
40
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
3
hdf5
1
bed bed3
1
bedpe bed3+
1
tagAlign bed3+
Organism
137
Homo sapiens
Biosample type
126
tissue
11
primary cell
Organ
358
liver
127
brain
104
kidney
94
heart
91
pancreas
84
limb
83
vasculature
79
blood vessel
76
epithelium
54
blood
54
bodily fluid
47
musculature of body
28
connective tissue
26
nerve
25
artery
18
ureter
13
spleen
13
vein
10
adipose tissue
6
eye
Project
137
AMP
Genome assembly (visualization)
135
GRCh38
75
hg19
Lab
137
AMP-T2D consortium
Audit category:
3
missing controlled_by
BIOSAMPLE
ASSAY
137 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
brain
6
14
layer of hippocampus
16
caudate nucleus
12
1
temporal lobe
13
angular gyrus
12
+ See 17 more…
primary cell
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
1
astrocyte of the hippocampus
1
brain pericyte
1
See all biosamples
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