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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
53
ChIP-seq
12
total RNA-seq
8
snATAC-seq
3
ATAC-seq
3
Hi-C
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
53
DNA binding
12
DNA accessibility
12
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
34
control
19
histone
19
histone modification
10
narrow histone mark
9
broad histone mark
Date released
28
November, 2017
12
February, 2020
9
October, 2017
8
January, 2021
8
October, 2019
6
July, 2019
3
January, 2019
3
May, 2019
3
November, 2018
2
March, 2020
1
February, 2023
1
January, 2018
Available data
36
tagAlign
34
bam
14
tsv
12
fastq
9
bigWig
3
bed bed3+
3
hdf5
2
bed bedMethyl
2
bed narrowPeak
2
bigBed bedMethyl
1
bed bed3
1
bed broadPeak
1
bigBed narrowPeak
Organism
84
Homo sapiens
Biosample type
62
tissue
15
primary cell
7
cell line
Organ
311
pancreas
260
liver
230
epithelium
149
kidney
127
heart
118
connective tissue
93
bone element
69
brain
67
adipose tissue
55
eye
45
vasculature
43
blood vessel
43
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
76
AMP
8
T1D
Genome assembly (visualization)
GRCh38
219
hg19
Lab
76
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
assembly!
GRCh38
BIOSAMPLE
ASSAY
84 results
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ChIP-seq
total RNA-seq
snATAC-seq
ATAC-seq
Hi-C
RRBS
pCHi-C
FAIRE-seq
tissue
brain
9
1
1
cingulate gyrus
8
layer of hippocampus
6
substantia nigra
4
1
caudate nucleus
3
1
+ See 20 more…
primary cell
peripheral blood mononuclear cell
8
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
brain pericyte
1
cell line
GM12878
6
1
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