Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
78
ChIP-seq
2
DNase-seq
1
ATAC-seq
Assay category
78
DNA binding
3
DNA accessibility
Target of assay
54
transcription factor
13
RNA binding protein
11
control
11
histone
11
histone modification
10
chromatin remodeller
6
broad histone mark
5
narrow histone mark
Date released
27
December, 2018
18
January, 2019
17
November, 2018
10
October, 2017
9
November, 2017
Available data
479
bam
422
bigWig
383
bed narrowPeak
257
bigBed narrowPeak
124
tagAlign
94
tsv
81
fastq
57
bed broadPeak
48
bigBed broadPeak
44
bed bed3+
4
hdf5
3
bed bedMethyl
3
bigBed bedMethyl
3
hic
2
bedpe bed3+
1
bed bed3
1
tagAlign bed3+
1
tar
Organism
81
Homo sapiens
Biosample type
60
cell line
12
tissue
9
primary cell
Organ
471
pancreas
465
liver
257
epithelium
101
connective tissue
60
blood
60
bodily fluid
44
adipose tissue
27
embryo
24
spleen
21
brain
6
vasculature
3
blood vessel
2
musculature of body
Project
81
AMP
Genome assembly (visualization)
71
hg19
69
GRCh38
Lab
81
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
4
missing controlled_by
BIOSAMPLE
ASSAY
81 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
cell line
GM12878
60
tissue
brain
9
2
cerebellum (Hemisphere)
1
primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
Download