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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
235
ChIP-seq
84
RNA microarray
79
total RNA-seq
34
DNase-seq
16
ATAC-seq
5
Hi-C
4
small RNA-seq
3
pCHi-C
3
single cell RNA-seq
2
FAIRE-seq
2
RRBS
Assay category
235
DNA binding
86
Transcription
52
DNA accessibility
5
3D chromatin structure
2
DNA methylation
Target of assay
202
histone
202
histone modification
123
narrow histone mark
79
broad histone mark
33
control
3
RNA binding protein
3
transcription factor
Date released
150
February, 2021
107
October, 2019
91
November, 2017
30
June, 2019
28
May, 2019
18
July, 2019
16
October, 2017
12
February, 2020
9
February, 2023
3
March, 2020
2
November, 2018
1
May, 2021
Available data
329
bam
295
bigWig
224
bed narrowPeak
140
bigBed narrowPeak
118
tagAlign
88
txt
84
tsv
51
bed broadPeak
42
bigBed broadPeak
37
bed bed3+
21
fastq
5
bed bed3
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
2
hic
1
bedpe bed3+
1
tagAlign bed3+
1
tar
Organism
467
Homo sapiens
Biosample type
423
tissue
44
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
466
AMP
1
T1D
Genome assembly (visualization)
295
GRCh38
251
hg19
Lab
466
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
87
inconsistent ontology term
1
audit script error
Audit category:
4
missing controlled_by
BIOSAMPLE
ASSAY
467 results
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ChIP-seq
RNA microarray
total RNA-seq
DNase-seq
ATAC-seq
Hi-C
small RNA-seq
pCHi-C
single cell RNA-seq
FAIRE-seq
RRBS
tissue
bone element
84
bone tissue
58
brain
20
1
14
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
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primary cell
endothelial cell of umbilical vein
17
2
2
1
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
+ See 4 more…
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