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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
473
total RNA-seq
246
ChIP-seq
40
DNase-seq
7
ATAC-seq
7
single cell RNA-seq
7
small RNA-seq
2
WGBS
Assay category
487
Transcription
246
DNA binding
47
DNA accessibility
2
DNA methylation
Target of assay
202
histone
202
histone modification
124
narrow histone mark
77
broad histone mark
43
transcription factor
13
RNA binding protein
4
control
2
chromatin remodeller
Date released
450
February, 2021
78
October, 2019
65
August, 2017
63
November, 2017
44
June, 2019
28
July, 2019
25
May, 2019
8
October, 2017
6
November, 2020
5
October, 2018
3
November, 2018
2
April, 2018
2
July, 2018
1
May, 2021
1
May, 2023
1
November, 2019
Available data
779
bam
775
bigWig
486
tsv
271
bed narrowPeak
150
bigBed narrowPeak
90
fastq
82
tagAlign
54
bed broadPeak
50
bed bed3+
46
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
782
Homo sapiens
Biosample type
683
tissue
54
in vitro differentiated cells
45
primary cell
Organ
635
pancreas
566
connective tissue
531
liver
424
adipose tissue
294
epithelium
226
heart
217
brain
205
kidney
191
vasculature
187
blood vessel
128
artery
96
limb
66
bone element
54
blood
54
bodily fluid
53
musculature of body
31
nerve
29
embryo
18
ureter
16
spleen
12
vein
8
skeleton
6
eye
1
pericardium
1
pituitary gland
Project
782
AMP
Genome assembly (visualization)
782
GRCh38
751
hg19
Lab
782
AMP-T2D consortium
Audit category:
13
inconsistent ontology term
Audit category:
20
missing controlled_by
Audit category:
6
inconsistent control read length
BIOSAMPLE
ASSAY
782 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
single cell RNA-seq
small RNA-seq
WGBS
tissue
adipose tissue
382
1
2
bone tissue
58
brain
1
11
14
layer of hippocampus
17
temporal lobe
1
13
1
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in vitro differentiated cells
adipocyte
4
48
1
cardiac fibroblast
1
primary cell
osteoblast
5
1
2
cardiac fibroblast
3
3
mesenchymal stem cell
6
pancreatic stellate cell
4
astrocyte of the cerebellum
2
1
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