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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
ChIP-seq
12
total RNA-seq
2
ATAC-seq
2
RRBS
2
pCHi-C
Assay category
54
DNA binding
12
Transcription
2
DNA accessibility
2
DNA methylation
Target of assay
32
control
22
histone
22
histone modification
12
narrow histone mark
10
broad histone mark
Date released
25
November, 2017
12
February, 2020
10
October, 2019
9
October, 2017
5
December, 2017
3
February, 2018
3
May, 2019
2
July, 2019
2
March, 2020
1
February, 2023
Available data
279
bam
bigWig
217
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
48
fastq
47
bed broadPeak
40
tsv
38
bed bed3+
38
bigBed broadPeak
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
72
Homo sapiens
Biosample type
63
tissue
8
in vitro differentiated cells
1
primary cell
Organ
323
pancreas
223
epithelium
223
kidney
169
heart
169
liver
114
connective tissue
101
bone element
81
vasculature
80
blood vessel
66
adipose tissue
64
brain
56
artery
55
eye
31
limb
28
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
72
AMP
Genome assembly (visualization)
6
hg19
4
GRCh38
Lab
72
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
2
missing controlled_by
files.file_type!
bigWig
BIOSAMPLE
ASSAY
72 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
RRBS
pCHi-C
tissue
brain
9
1
1
cingulate gyrus
8
layer of hippocampus
6
substantia nigra
4
1
caudate nucleus
3
1
+ See 22 more…
in vitro differentiated cells
pancreatic endoderm
6
Hepatic endoderm
2
primary cell
choroid plexus epithelial cell
1
See all biosamples
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