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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
132
ChIP-seq
36
DNase-seq
36
total RNA-seq
32
ATAC-seq
6
pCHi-C
4
small RNA-seq
3
Hi-C
3
RRBS
3
single cell RNA-seq
1
FAIRE-seq
Assay category
132
DNA binding
69
DNA accessibility
43
Transcription
3
3D chromatin structure
3
DNA methylation
Target of assay
117
histone
117
histone modification
89
narrow histone mark
28
broad histone mark
17
control
1
RNA binding protein
1
transcription factor
Date released
107
October, 2019
November, 2017
37
June, 2019
32
February, 2023
28
May, 2019
19
July, 2019
16
October, 2017
13
February, 2020
2
March, 2020
2
November, 2018
Available data
172
bam
172
bed narrowPeak
162
bigWig
70
bigBed narrowPeak
52
tagAlign
39
bed bed3+
39
bed broadPeak
36
bigBed broadPeak
31
tsv
12
fastq
3
bed bedMethyl
3
bigBed bedMethyl
3
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
256
Homo sapiens
Biosample type
239
tissue
17
primary cell
Organ
946
pancreas
684
connective tissue
518
epithelium
491
adipose tissue
476
liver
354
kidney
353
heart
230
vasculature
227
blood vessel
195
brain
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
256
AMP
Genome assembly (visualization)
183
hg19
160
GRCh38
Lab
256
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
month_released!
November, 2017
BIOSAMPLE
ASSAY
256 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
pCHi-C
small RNA-seq
Hi-C
RRBS
single cell RNA-seq
FAIRE-seq
tissue
brain
20
14
1
1
1
islet of Langerhans
2
14
2
4
retina
3
3
15
temporal lobe
15
1
1
angular gyrus
15
+ See 77 more…
primary cell
retinal pigment epithelial cell
3
1
1
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 3 more…
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