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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
110
DNase-seq
15
ChIP-seq
Assay category
110
DNA accessibility
15
DNA binding
Target of assay
12
histone
12
histone modification
8
narrow histone mark
4
broad histone mark
3
RNA binding protein
3
transcription factor
Date released
108
June, 2019
12
November, 2017
3
October, 2017
2
November, 2018
Available data
387
bam
386
bed narrowPeak
353
bigWig
231
bigBed narrowPeak
125
bed broadPeak
118
tagAlign
116
bigBed broadPeak
113
bed bed3+
64
xls
62
txt
50
tsv
21
fastq
6
bed bedMethyl
6
bigBed bedMethyl
5
csv
3
hdf5
1
bed bed3
1
hic
1
tagAlign bed3+
Organism
125
Homo sapiens
Biosample type
104
tissue
21
primary cell
Organ
78
kidney
63
liver
47
brain
46
musculature of body
36
limb
30
heart
22
epithelium
21
pancreas
18
ureter
17
vasculature
13
blood vessel
10
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
125
AMP
Genome assembly (visualization)
124
GRCh38
108
hg19
Lab
125
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
2
missing controlled_by
BIOSAMPLE
ASSAY
125 results
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DNase-seq
ChIP-seq
tissue
brain
14
3
kidney
13
renal cortex interstitium
11
renal pelvis
10
right kidney
10
+ See 20 more…
primary cell
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 8 more…
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