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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
68
DNase-seq
24
total RNA-seq
12
ATAC-seq
7
Hi-C
4
small RNA-seq
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
1
WGBS
Assay category
81
DNA accessibility
31
Transcription
7
3D chromatin structure
3
DNA methylation
Target of assay
3
control
Date released
62
June, 2019
23
July, 2019
15
February, 2020
12
October, 2019
6
February, 2021
2
March, 2020
2
November, 2018
1
February, 2023
1
October, 2017
Available data
96
bam
93
bigWig
77
bed narrowPeak
71
bed bed3+
69
bigBed narrowPeak
68
bed broadPeak
68
bigBed broadPeak
33
tsv
3
bed bedMethyl
3
bigBed bedMethyl
3
fastq
3
hdf5
1
bed bed3
Organism
124
Homo sapiens
Biosample type
112
tissue
12
primary cell
Organ
728
pancreas
531
connective tissue
418
adipose tissue
395
epithelium
302
kidney
259
heart
239
liver
159
bone element
134
vasculature
131
blood vessel
107
artery
68
brain
57
musculature of body
56
eye
56
limb
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
124
AMP
Genome assembly (visualization)
95
GRCh38
89
hg19
Lab
124
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
124 results
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DNase-seq
total RNA-seq
ATAC-seq
Hi-C
small RNA-seq
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
WGBS
tissue
brain
14
1
1
1
muscle of arm
17
muscle of leg
13
1
tibial nerve
2
5
1
frontal cortex
2
2
1
1
+ See 33 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
+ See 2 more…
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