Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ChIP-seq
15
total RNA-seq
7
Hi-C
2
ATAC-seq
2
RRBS
2
pCHi-C
Assay category
23
DNA binding
15
Transcription
7
3D chromatin structure
2
DNA accessibility
2
DNA methylation
Target of assay
22
histone
22
histone modification
13
narrow histone mark
9
broad histone mark
1
control
Date released
15
February, 2020
13
November, 2017
9
July, 2019
7
October, 2017
4
October, 2019
2
March, 2020
1
February, 2023
Available data
bam
313
bigWig
295
bed narrowPeak
211
bigBed narrowPeak
118
tagAlign
83
bed broadPeak
74
bigBed broadPeak
71
bed bed3+
33
tsv
21
fastq
3
bed bedMethyl
3
bigBed bedMethyl
3
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
51
Homo sapiens
Biosample type
47
tissue
4
primary cell
Organ
257
pancreas
210
kidney
207
epithelium
142
heart
110
liver
93
bone element
91
connective tissue
54
eye
51
vasculature
50
blood vessel
49
adipose tissue
43
brain
39
artery
39
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
51
AMP
Genome assembly (visualization)
9
hg19
2
GRCh38
Lab
51
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bam
BIOSAMPLE
ASSAY
51 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
Hi-C
ATAC-seq
RRBS
pCHi-C
tissue
brain
7
1
1
cingulate gyrus
6
gastrocnemius medialis
1
4
layer of hippocampus
3
substantia nigra
2
1
+ See 18 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
choroid plexus epithelial cell
1
See all biosamples
Download