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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
266
ChIP-seq
66
DNase-seq
24
total RNA-seq
11
ATAC-seq
7
Hi-C
4
small RNA-seq
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
1
WGBS
Assay category
266
DNA binding
78
DNA accessibility
31
Transcription
7
3D chromatin structure
3
DNA methylation
Target of assay
226
histone
226
histone modification
128
narrow histone mark
98
broad histone mark
43
control
Date released
155
October, 2019
82
November, 2017
62
June, 2019
35
May, 2019
23
July, 2019
15
February, 2020
6
February, 2021
6
October, 2017
2
March, 2020
1
February, 2023
Available data
357
bam
313
bigWig
295
bed narrowPeak
211
bigBed narrowPeak
118
tagAlign
83
bed broadPeak
74
bigBed broadPeak
71
bed bed3+
33
tsv
fastq
3
bed bedMethyl
3
bigBed bedMethyl
3
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
387
Homo sapiens
Biosample type
375
tissue
12
primary cell
Organ
583
connective tissue
475
pancreas
447
adipose tissue
354
kidney
353
heart
326
liver
267
epithelium
265
brain
230
vasculature
227
blood vessel
159
bone element
141
artery
122
limb
94
musculature of body
61
eye
43
nerve
22
vein
20
lung
18
ureter
16
skeleton
10
embryo
9
blood
9
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
387
AMP
Genome assembly (visualization)
298
GRCh38
243
hg19
Lab
387
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
files.file_type!
fastq
BIOSAMPLE
ASSAY
387 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
Hi-C
small RNA-seq
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
WGBS
tissue
tibial nerve
35
2
5
1
tibial artery
23
2
1
1
brain
11
12
1
1
1
layer of hippocampus
23
muscle of leg
7
13
1
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primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
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