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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
32
DNase-seq
17
total RNA-seq
12
single cell RNA-seq
10
snATAC-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
pCHi-C
2
RRBS
1
FAIRE-seq
Assay category
47
DNA accessibility
33
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
3
control
Date released
30
June, 2019
19
April, 2020
18
July, 2019
12
February, 2020
3
March, 2020
2
November, 2018
2
October, 2019
1
February, 2023
1
October, 2017
Available data
50
bigWig
47
bam
35
bed bed3+
33
bed narrowPeak
33
bigBed narrowPeak
32
bed broadPeak
32
bigBed broadPeak
27
tsv
3
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
87
Homo sapiens
Biosample type
76
tissue
12
primary cell
Organ
728
pancreas
531
connective tissue
418
adipose tissue
395
epithelium
302
kidney
259
heart
239
liver
159
bone element
134
vasculature
131
blood vessel
107
artery
68
brain
57
musculature of body
56
eye
56
limb
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
69
AMP
19
LungMap
Genome assembly (visualization)
46
GRCh38
41
hg19
Lab
69
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
1
inconsistent ontology term
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
88 results
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DNase-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
ATAC-seq
small RNA-seq
Hi-C
pCHi-C
RRBS
FAIRE-seq
tissue
lung
9
10
1
brain
14
1
1
1
frontal cortex
2
2
1
1
cerebellum (Hemisphere)
1
1
1
1
Ammon's horn
1
1
1
+ See 21 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
+ See 2 more…
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