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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
4
ATAC-seq
3
Hi-C
2
RRBS
1
FAIRE-seq
Assay category
DNA binding
37
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Date released
30
June, 2019
7
July, 2019
2
November, 2018
1
February, 2023
1
October, 2017
1
October, 2019
Available data
50
bigWig
47
bam
35
bed bed3+
33
bed narrowPeak
33
bigBed narrowPeak
32
bed broadPeak
32
bigBed broadPeak
tsv
3
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
42
Homo sapiens
Biosample type
33
tissue
9
primary cell
Organ
311
pancreas
278
kidney
239
epithelium
101
bone element
91
heart
66
vasculature
65
liver
63
blood vessel
53
connective tissue
51
eye
49
artery
49
limb
48
musculature of body
42
brain
19
lung
18
ureter
17
adipose tissue
16
skeleton
9
blood
9
bodily fluid
5
vein
4
spleen
3
nerve
1
bone marrow
1
embryo
1
pericardium
1
pituitary gland
1
skin of body
1
thymus
0
mammary gland
Project
42
AMP
Genome assembly (visualization)
34
GRCh38
29
hg19
Lab
42
AMP-T2D consortium
assay_slims!
DNA binding
files.file_type!
tsv
BIOSAMPLE
ASSAY
42 results
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DNase-seq
ATAC-seq
Hi-C
RRBS
FAIRE-seq
tissue
brain
14
1
1
frontal cortex
2
1
cerebellum (Hemisphere)
1
1
Ammon's horn
1
caudate nucleus
1
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primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
choroid plexus epithelial cell
1
1
astrocyte of the hippocampus
1
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