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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
total RNA-seq
4
small RNA-seq
3
ATAC-seq
3
Hi-C
3
pCHi-C
3
single cell RNA-seq
2
RRBS
Assay category
DNA binding
24
Transcription
3
3D chromatin structure
3
DNA accessibility
2
DNA methylation
Target of assay
3
control
Date released
17
July, 2019
12
February, 2020
3
March, 2020
2
October, 2019
February, 2023
1
October, 2017
Available data
50
bigWig
47
bam
35
bed bed3+
bed narrowPeak
33
bigBed narrowPeak
32
bed broadPeak
32
bigBed broadPeak
27
tsv
3
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
Organism
35
Homo sapiens
Biosample type
27
tissue
7
primary cell
1
cell line
Organ
598
pancreas
501
connective tissue
412
adipose tissue
301
epithelium
211
liver
181
heart
158
kidney
143
bone element
76
vasculature
75
blood vessel
58
artery
34
brain
24
musculature of body
21
eye
20
lung
15
embryo
12
limb
9
blood
9
bodily fluid
5
nerve
3
spleen
2
intestine
2
pericardium
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
35
AMP
Genome assembly (visualization)
17
hg19
14
GRCh38
Lab
35
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
DNA binding
month_released!
February, 2023
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
35 results
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total RNA-seq
small RNA-seq
ATAC-seq
Hi-C
pCHi-C
single cell RNA-seq
RRBS
tissue
cerebellum (Hemisphere)
1
1
1
frontal cortex
2
1
Ammon's horn
1
1
brain
1
1
cerebellum
2
+ See 13 more…
primary cell
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
+ See 1 more…
cell line
MCF-7
1
See all biosamples
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