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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ChIP-seq
DNase-seq
17
total RNA-seq
4
small RNA-seq
3
ATAC-seq
3
Hi-C
3
pCHi-C
3
single cell RNA-seq
2
RRBS
1
FAIRE-seq
Assay category
200
DNA binding
24
Transcription
4
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
177
histone
177
histone modification
113
narrow histone mark
64
broad histone mark
26
control
Date released
86
October, 2019
82
November, 2017
28
May, 2019
18
July, 2019
12
February, 2020
6
October, 2017
3
March, 2020
1
February, 2023
Available data
211
bam
190
bigWig
171
bed narrowPeak
118
tagAlign
95
bigBed narrowPeak
27
tsv
fastq
15
bed broadPeak
6
bigBed broadPeak
3
bed bed3+
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
236
Homo sapiens
Biosample type
228
tissue
7
primary cell
1
cell line
Organ
576
connective tissue
470
pancreas
446
adipose tissue
363
heart
323
liver
273
kidney
248
epithelium
235
brain
219
vasculature
218
blood vessel
159
bone element
137
artery
86
limb
61
musculature of body
57
eye
41
nerve
20
lung
20
vein
16
skeleton
10
embryo
9
blood
9
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
236
AMP
Genome assembly (visualization)
172
GRCh38
127
hg19
Lab
236
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
assay_title!
DNase-seq
files.file_type!
fastq
BIOSAMPLE
ASSAY
236 results
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Clear Filters
ChIP-seq
total RNA-seq
small RNA-seq
ATAC-seq
Hi-C
pCHi-C
single cell RNA-seq
RRBS
FAIRE-seq
tissue
layer of hippocampus
23
substantia nigra
16
1
temporal lobe
15
1
1
caudate nucleus
15
1
angular gyrus
15
+ See 72 more…
primary cell
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
+ See 1 more…
cell line
MCF-7
1
See all biosamples
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